PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00074606001
Common NameGSBRNA2T00074606001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 248aa    MW: 26714.5 Da    PI: 8.1217
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00074606001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.23.4e-304106198
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+++C ++p++     +++q++++ +++k++G++ +++ll++ p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++
  GSBRNA2T00074606001   4 SCNGCRVLRKGCSENCSIRPCLqwiksAESQANATVFLAKFYGRAGLMNLLSTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGILWSGNW 93 
                          6*********************9999777889********************************************************** PP

               DUF260  86 qleqlkaelallk 98 
                          +l+q+++e+++++
  GSBRNA2T00074606001  94 HLCQAAVEAVMRG 106
                          *******998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.9453109IPR004883Lateral organ boundaries, LOB
PfamPF031958.4E-254104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLSTGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGILWS GNWHLCQAAV EAVMRGSPVT PIACDAAVTG  120
QAPPFNNNKL FDIRHVSRDE NAVKSRCRSS RSGACKEGRN VRSSLSHESS LSHESAVVKG  180
EGSMVSSEET TEEPSWIGLE LTLGLEPSGA RGSHVVVPIK KRKLEKSGTC DDDADTCKIE  240
LGLVCSE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.117320.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00074606001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738701e-135AB473870.1 Arabidopsis thaliana ASL37 mRNA for ASYMMETRIC LEAVES2-like 37 protein, complete cds.
GenBankAK2296501e-135AK229650.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL19-73-A22.
GenBankBT0109431e-135BT010943.1 Arabidopsis thaliana At1g67100 gene, complete cds.
GenBankBT0116501e-135BT011650.1 Arabidopsis thaliana At1g67100 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013676373.10.0PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9ZW961e-127LBD40_ARATH; LOB domain-containing protein 40
TrEMBLA0A078HWZ50.0A0A078HWZ5_BRANA; BnaC02g17190D protein
TrEMBLA0A0D3ANI60.0A0A0D3ANI6_BRAOL; Uncharacterized protein
STRINGAl_scaffold_0002_13371e-130(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152481518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-127LOB domain-containing protein 40
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]